Datasets
=========

To download one of the data sets, simply use the wget command:

.. code-block:: console

   wget https://s3.amazonaws.com/dovetail.pub/capture/fastqs/NSC_capture_R1_rep1.1M.fastq.gz
   wget https://s3.amazonaws.com/dovetail.pub/capture/fastqs/NSC_capture_R2_rep1.1M.fastq.gz

For testing purposes, we recommend the above fastq files with 1 million read pairs.

**Human capture panel**

*Panel associated files*

+------------------+------------------------------------------------------------------------+
|File              | Link                                                                   |
+==================+========================================================================+
|Probes            |https://s3.amazonaws.com/dovetail.pub/capture/human/h_probes_v1.0.bed   |
+------------------+------------------------------------------------------------------------+
|Baits             |https://s3.amazonaws.com/dovetail.pub/capture/human/h_baits_v1.0.bed    |
+------------------+------------------------------------------------------------------------+
|Features table    |https://s3.amazonaws.com/dovetail.pub/capture/human/h_probe_metaData.csv|
|(ensembl v86)     |                                                                        |
+------------------+------------------------------------------------------------------------+
|reference         |https://s3.amazonaws.com/dovetail.pub/reference/human/hg38.fa           |
|(GRCh38.p12)      |                                                                        |
+------------------+------------------------------------------------------------------------+

*Sequenced libraries*

+------------------+-------------------------------------------------------------------------------------------+
| Library          | Link                                                                                      |
+==================+===========================================================================================+
| NSC capture rep1 | - https://s3.amazonaws.com/dovetail.pub/capture/fastqs/NSC_rep1_R1.fastq.gz               |
|                  | - https://s3.amazonaws.com/dovetail.pub/capture/fastqs/NSC_rep1_R2.fastq.gz               |
+------------------+-------------------------------------------------------------------------------------------+
| NSC capture rep2 | - https://s3.amazonaws.com/dovetail.pub/capture/fastqs/NSC_rep2_R1.fastq.gz               |
|                  | - https://s3.amazonaws.com/dovetail.pub/capture/fastqs/NSC_rep2_R2.fastq.gz               |      
+------------------+-------------------------------------------------------------------------------------------+
| iPSC capture rep1| - https://s3.amazonaws.com/dovetail.pub/capture/fastqs/iPSC_rep1_R1.fastq.gz              |
|                  | - https://s3.amazonaws.com/dovetail.pub/capture/fastqs/iPSC_rep1_R2.fastq.gz              |
+------------------+-------------------------------------------------------------------------------------------+
| iPSC capture rep2| - https://s3.amazonaws.com/dovetail.pub/capture/fastqs/iPSC_rep2_R1.fastq.gz              |
|                  | - https://s3.amazonaws.com/dovetail.pub/capture/fastqs/iPSC_rep2_R2.fastq.gz              |
+------------------+-------------------------------------------------------------------------------------------+

*CHiCAGO supporting files*

+----------------------+-----------------------------------------------------------------------------------------+
| Library              | Link                                                                                    |
+======================+=========================================================================================+
|5kb pooled fragments  |https://s3.amazonaws.com/dovetail.pub/capture/human/CHiCAGO_files/h_5kDesignFiles.tar.gz |
|Design files          |                                                                                         |
+----------------------+-----------------------------------------------------------------------------------------+
|10kb pooled fragments |https://s3.amazonaws.com/dovetail.pub/capture/human/CHiCAGO_files/h_10kDesignFiles.tar.gz|
|Design files          |                                                                                         |
+----------------------+-----------------------------------------------------------------------------------------+
|20kb pooled fragments |https://s3.amazonaws.com/dovetail.pub/capture/human/CHiCAGO_files/h_20kDesignFiles.tar.gz|
|Design files          |                                                                                         |
+----------------------+-----------------------------------------------------------------------------------------+

**Mouse capture panel**

*Panel associated files*

+------------------+---------------------------------------------------------------------------------+
|File              | Link                                                                            |
+==================+=================================================================================+
|Probes            | - https://s3.amazonaws.com/dovetail.pub/capture/mouse/m_probes_v1.0.bed         |
+------------------+---------------------------------------------------------------------------------+
|Baits             | - https://s3.amazonaws.com/dovetail.pub/capture/mouse/m_baits_v1.0.bed          |
+------------------+---------------------------------------------------------------------------------+
|Features table    | - https://s3.amazonaws.com/dovetail.pub/capture/mouse/m_probe_metaData.csv      |
+------------------+---------------------------------------------------------------------------------+

*CHiCAGO supporting files*

+----------------------+-----------------------------------------------------------------------------------------+
| Library              | Link                                                                                    |
+======================+=========================================================================================+
|5kb pooled fragments  |https://s3.amazonaws.com/dovetail.pub/capture/mouse/CHiCAGO_files/m_5kDesignFiles.tar.gz |
|Design files          |                                                                                         |
+----------------------+-----------------------------------------------------------------------------------------+
|10kb pooled fragments |https://s3.amazonaws.com/dovetail.pub/capture/mouse/CHiCAGO_files/m_10kDesignFiles.tar.gz|
|Design files          |                                                                                         |
+----------------------+-----------------------------------------------------------------------------------------+
|20kb pooled fragments |https://s3.amazonaws.com/dovetail.pub/capture/mouse/CHiCAGO_files/m_20kDesignFiles.tar.gz|
|Design files          |                                                                                         |
+----------------------+-----------------------------------------------------------------------------------------+